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ChromasPro具体功能
打开Applied Biosystems .ab1, Staden Chromatogram (SCF and ZTR), 454 SFF, FASTA, FASTQ, EMBL, GenBank, SwissProt, GenPept, GCG RSF和纯文本格式中的序列。
以.ab1, .scf, .fasta 和.fastq格式保存序列。
使用图形界面组装重叠序列,生成一致性并**模糊性进行编辑。
使用高质量数据自动去除低质量序列以改进序列组装。
使用参考序列作为组装的支架。
生成限制位点和片段图,并列出切割,非切割和片段。
映射开放阅读框,由G+C框架图,并用一次点击翻译ORFs。
打印色谱图,限制位点和片段图,和开放阅读框架图。
通过NCBI进行核苷酸和蛋白质BLAST搜索。
与ClustalW接口执行多个对齐。
反向互补序列和色谱图。
通过匹配或优对齐搜索序列。
编辑核苷酸序列时显示翻译。
进行反向翻译并绘制核苷酸简并。
绘制蛋白质的亲水性和抗原性。
复制色谱切片的图像,粘贴到文档或演示文稿中。
Please note: ChromasPro 2 will install separately from versions older than 1.9.9. It is recommended that you uninstall any old version present. See the version history for changes to recent versions.
ChromasPro DNA序列分析软件
ChromasPro适用于DNA序列组装项目,可达到几兆字节,并进行基本序列编辑和分析。它能够从Sanger序列器,比如ABI,454和Illumina下一代序列器中组装数据,如果有8GB的可用内存,则多可组装1,000,000个序列。
通过匹配或优对齐搜索序列。
编辑核苷酸序列时显示翻译。
进行反向翻译并绘制核苷酸简并。
绘制蛋白质的亲水性和抗原性。
复制色谱切片的图像,粘贴到文档或演示文稿中。
系统需求
Chromas is a free, simple, easy-to-use viewer and editor for chromatograms (traces) from automated Sanger sequencers. It has many format conversion options including batch processing functions to handle many files at once. As of version 2.6 it can use PeakTrace RP to enhance .ab1 files and extract more high-quality bases (this is a paid service). More…
ChromasPro is for assembly of sequence reads into contigs, with a graphical contig editor which displays aligned chromatograms. It also peforms general sequence analysis such as restriction enzyme mapping, open-reading-frame searches, and BLAST submission. More…
Fixed disappearing cursor in long contigs.
Fixed bug which left the old selected base still highlighted after moving the cursor.
Fixed the ‘print to one page’ option for contig printing.
Clustal alignment diagram now draws correctly.
Fixed .scf file comments writing bug which may have affected compatibility with other programs.
Fixed disassembly bug which slowed disassembly and left some selected contigs still assembled.
Fixed bug which sometimes left one or two bases undrawn at the consensus 3′ end.
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